PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01000386001
Common NameLOC100243782, VIT_17s0000g00810, VITISV_000774
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ZF-HD
Protein Properties Length: 119aa    MW: 13305 Da    PI: 8.3878
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01000386001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer91.29.4e-29456459
        ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                         Y+eCl+NhAaslG++a+DGCgEf+ +    +++ +l CaACgCHRnFHR+  ++
  GSVIVT01000386001  4 ELYRECLRNHAASLGSYATDGCGEFTLD---ATSPGGLLCAACGCHRNFHRKLISN 56
                       68************************98...5689*****************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.6E-24552IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-17652IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.095653IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.0E-24652IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.85E-942104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-2145106IPR009057Homeodomain-like
TIGRFAMsTIGR015659.0E-2347104IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MEGELYRECL RNHAASLGSY ATDGCGEFTL DATSPGGLLC AACGCHRNFH RKLISNQKEK  60
MLAFAEKIRW KMQRKEEEDE IERFCRGVGV SRQVFKVWMH NHKNSSSSSS SASTTLTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-17471091879ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4795601e-102AM479560.2 Vitis vinifera contig VV78X074758.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263466.14e-71PREDICTED: zinc-finger homeodomain protein 9
SwissprotQ10DV52e-22ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
SwissprotA2XLF42e-22ZHD11_ORYSI; Zinc-finger homeodomain protein 11
TrEMBLA5C2A74e-71A5C2A7_VITVI; Putative uncharacterized protein
STRINGVIT_17s0000g00810.t011e-70(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.19e-20homeobox protein 34
Publications ? help Back to Top
  1. Velasco R, et al.
    A high quality draft consensus sequence of the genome of a heterozygous grapevine variety.
    PLoS ONE, 2007. 2(12): p. e1326
    [PMID:18094749]